Known glitch. I've seen it on a lot of other guides as well. This should also be in the support sub-forum by the way.

Thanks to The_Nameless_Bard for the sig!
What I've found is that there is a tag at the end of the URL for your new Masteries:
http://www.mobafire.com/league-of-legends/mastery-tree-planner#&tree1=1-3-4-2-4-4-1-4-1-1-3-1-0-1-0-0-0&tree2=0-0-0-0-0-0-0-0-0-0-0-0-0-0-0-0&tree3=0-0-0-0-0-0-0-0-0-0-0-0-0-0-0-0&v=2
If you are having problems take that last tag (the red bit) off your mastery coding and you should be fine
http://www.mobafire.com/league-of-legends/mastery-tree-planner#&tree1=1-3-4-2-4-4-1-4-1-1-3-1-0-1-0-0-0&tree2=0-0-0-0-0-0-0-0-0-0-0-0-0-0-0-0&tree3=0-0-0-0-0-0-0-0-0-0-0-0-0-0-0-0&v=2
If you are having problems take that last tag (the red bit) off your mastery coding and you should be fine
How should that be used in the when coding the mastery chart itself exactly? I can't seem to figure it out. I've tried things like [masteries&v=2], [&v=2], and &v=2. Not sure if I'm even in the ballpark on these guesses.
Thanks to JEFFY40HANDS and Vort for the great signatures!
what you should be using to get the right masteries is: [masteries=http://www.mobafire.com/league-of-legends/mastery-tree-planner#&tree1=1-3-4-2-4-4-1-4-1-1-3-1-0-1-0-0-0&tree2=0-0-0-0-0-0-0-0-0-0-0-0-0-0-0-0&tree3=0-0-0-0-0-0-0-0-0-0-0-0-0-0-0-0]
Copy that exactly as I have it from my post and it should work correctly.
Copy that exactly as I have it from my post and it should work correctly.
Sig courtesy of GrandmasterD. Go get your own sig from them. :D
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Here's the URL to my guide: http://www.mobafire.com/league-of-legends/build/veigar-the-definition-of-pain-105608